Superkingdom Bacteria
Protein Length (Details)
Average protein length
Proteins Length | |
---|---|
For proteins with length <= 1000 | 296 |
For all proteins | 313 |
Proteins longer than 1000
Length Range | Proteins Count |
---|---|
1001 - 2000 | 10527 |
2001 - 5000 | 831 |
5001 - 10000 | 75 |
Proteins longer than 10000
Protein ID | Protein Lenght | Organism | AA Sequence |
---|---|---|---|
78188592 | 36805 | NC_007514.1 | Download |
78188594 | 20646 | NC_007514.1 | Download |
37526561 | 16367 | NC_005126.1 | Download |
78189208 | 16311 | NC_007514.1 | Download |
54027007 | 14474 | NC_006361.1 | Download |
66045852 | 13537 | NC_007005.1 | Download |
33865487 | 10791 | NC_005070.1 | Download |
49483625 | 10746 | NC_002952.2 | Download |
57651379 | 10498 | NC_002951.2 | Download |
57867844 | 10203 | NC_002976.3 | Download |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
Superkingdom | Phylum | Organisms | Proteins |
---|---|---|---|
Bacteria | Actinobacteria | 19 | 63125 |
Bacteria | Alphaproteobacteria | 32 | 75868 |
Bacteria | Aquificae | 1 | 1527 |
Bacteria | Bacteroidetes/Chlorobi | 8 | 24573 |
Bacteria | Betaproteobacteria | 19 | 59834 |
Bacteria | Chlamydiae/Verrucomicrobia | 10 | 10977 |
Bacteria | Chloroflexi | 2 | 3036 |
Bacteria | Cyanobacteria | 15 | 42933 |
Bacteria | Deinococcus-Thermus | 3 | 6556 |
Bacteria | Deltaproteobacteria | 7 | 24128 |
Bacteria | Epsilonproteobacteria | 7 | 12520 |
Bacteria | Firmicutes | 72 | 175762 |
Bacteria | Fusobacteria | 1 | 2064 |
Bacteria | Gammaproteobacteria | 67 | 229209 |
Bacteria | Planctomycetes | 1 | 7322 |
Bacteria | Spirochaetes | 6 | 13166 |
Bacteria | Thermotogae | 1 | 1856 |
Proteins by COGs (Details) (COG ordering)
COG Group | COG | Proteins |
---|---|---|
Information storage and processing (Isp) | A - RNA processing and modification | 138 |
B - Chromatin structure and dynamics | 210 | |
J - Translation | 40591 | |
K - Transcription | 42747 | |
L - Replication, recombination and repair | 38413 | |
Total | 118724 | |
Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 6592 |
M - Cell wall/membrane biogenesis | 36984 | |
N - Cell motility | 12105 | |
O - Posttranslational modification, protein turnover, chaperones | 24224 | |
T - Signal transduction mechanisms | 30489 | |
U - Intracellular trafficking and secretion | 15624 | |
V - Defense mechanisms | 10236 | |
W - Extracellular structures | 57 | |
Z - Cytoskeleton | 50 | |
Total | 124362 | |
Metabolism (Me) | C - Energy production and conversion | 37012 |
E - Amino acid transport and metabolism | 52404 | |
F - Nucleotide transport and metabolism | 16667 | |
G - Carbohydrate transport and metabolism | 37809 | |
H - Coenzyme transport and metabolism | 28273 | |
I - Lipid transport and metabolism | 21421 | |
P - Inorganic ion transport and metabolism | 32046 | |
Q - Secondary metabolites biosynthesis, transport and catabolism | 12906 | |
Total | 222438 | |
Poorly characterized (Pc) | R - General function prediction only | 69322 |
S - Function unknown | 53547 | |
Total | 122869 | |
Not in cogs (N.C.) | - - Not in COGs | 192299 |
Total | 192299 |
Amino Acids in Proteins With Disordered Regions
Superkingdom | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
---|---|---|---|---|---|---|---|
Bacteria | Ala | 9.52% | 9.13% | 10.04% | 10.88% | 11.35% | 11.84% |
Arg | 5.65% | 6.94% | 7.38% | 7.65% | 7.72% | 7.72% | |
Asn | 3.84% | 4.28% | 4.05% | 3.95% | 3.95% | 4.03% | |
Asp | 5.36% | 6.08% | 6.00% | 5.95% | 5.99% | 6.06% | |
Cys | 0.97% | 0.41% | 0.45% | 0.52% | 0.54% | 0.54% | |
Gln | 3.91% | 5.03% | 5.28% | 5.49% | 5.64% | 5.83% | |
Glu | 6.13% | 9.24% | 9.08% | 8.91% | 8.91% | 8.95% | |
Gly | 7.40% | 7.19% | 7.11% | 6.94% | 6.98% | 7.12% | |
His | 2.15% | 2.00% | 1.98% | 1.79% | 1.73% | 1.71% | |
Ile | 6.21% | 3.14% | 3.11% | 3.29% | 3.35% | 3.37% | |
Leu | 10.35% | 6.81% | 7.20% | 7.70% | 7.84% | 7.86% | |
Lys | 5.05% | 8.09% | 7.41% | 7.07% | 6.93% | 6.87% | |
Met | 2.41% | 3.10% | 2.26% | 2.18% | 2.08% | 1.98% | |
Phe | 4.02% | 1.85% | 1.83% | 1.91% | 1.90% | 1.87% | |
Pro | 4.44% | 6.05% | 6.33% | 6.42% | 6.48% | 6.54% | |
Ser | 6.00% | 9.06% | 9.15% | 8.65% | 8.55% | 8.56% | |
Thr | 5.36% | 5.66% | 5.84% | 5.95% | 6.05% | 6.20% | |
Trp | 1.24% | 0.40% | 0.40% | 0.43% | 0.44% | 0.45% | |
Tyr | 2.97% | 1.48% | 1.39% | 1.35% | 1.32% | 1.30% | |
Val | 7.04% | 4.03% | 4.27% | 4.60% | 4.75% | 4.88% |