Phylum Gammaproteobacteria
Protein Length (Details)
Average protein length
| Proteins Length | |
|---|---|
| For proteins with length <= 1000 | 300 |
| For all proteins | 316 |
Proteins longer than 1000
| Length Range | Proteins Count |
|---|---|
| 1001 - 2000 | 3201 |
| 2001 - 5000 | 269 |
| 5001 - 10000 | 30 |
Proteins longer than 10000
| Protein ID | Protein Lenght | Organism | AA Sequence |
|---|---|---|---|
| 37526561 | 16367 | NC_005126.1 | Download |
| 66045852 | 13537 | NC_007005.1 | Download |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
Proteins by COGs (Details) (COG ordering)
| COG Group | COG | Proteins |
|---|---|---|
| Information storage and processing (Isp) | A - RNA processing and modification | 87 |
| B - Chromatin structure and dynamics | 43 | |
| J - Translation | 11117 | |
| K - Transcription | 13751 | |
| L - Replication, recombination and repair | 13801 | |
| Total | 37755 | |
| Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 2012 |
| M - Cell wall/membrane biogenesis | 12234 | |
| N - Cell motility | 5725 | |
| O - Posttranslational modification, protein turnover, chaperones | 8121 | |
| T - Signal transduction mechanisms | 10511 | |
| U - Intracellular trafficking and secretion | 6605 | |
| V - Defense mechanisms | 2678 | |
| W - Extracellular structures | 29 | |
| Z - Cytoskeleton | 14 | |
| Total | 42230 | |
| Metabolism (Me) | C - Energy production and conversion | 11832 |
| E - Amino acid transport and metabolism | 16911 | |
| F - Nucleotide transport and metabolism | 4623 | |
| G - Carbohydrate transport and metabolism | 12325 | |
| H - Coenzyme transport and metabolism | 8790 | |
| I - Lipid transport and metabolism | 6140 | |
| P - Inorganic ion transport and metabolism | 10356 | |
| Q - Secondary metabolites biosynthesis, transport and catabolism | 3873 | |
| Total | 70079 | |
| Poorly characterized (Pc) | R - General function prediction only | 20562 |
| S - Function unknown | 17343 | |
| Total | 37905 | |
| Not in cogs (N.C.) | - - Not in COGs | 49670 |
| Total | 49670 |
Amino Acids in Proteins With Disordered Regions
| Phylum | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
|---|---|---|---|---|---|---|---|
| Gammaproteobacteria | Ala | 9.74% | 9.23% | 10.17% | 11.15% | 11.74% | 12.39% |
| Arg | 5.73% | 6.89% | 7.31% | 7.53% | 7.58% | 7.53% | |
| Asn | 3.81% | 4.32% | 4.09% | 3.99% | 3.98% | 4.04% | |
| Asp | 5.28% | 6.06% | 5.96% | 5.87% | 5.90% | 5.95% | |
| Cys | 1.07% | 0.43% | 0.46% | 0.54% | 0.55% | 0.55% | |
| Gln | 4.54% | 6.08% | 6.49% | 6.89% | 7.14% | 7.43% | |
| Glu | 5.74% | 8.71% | 8.58% | 8.47% | 8.54% | 8.66% | |
| Gly | 7.30% | 6.93% | 6.77% | 6.45% | 6.38% | 6.42% | |
| His | 2.30% | 2.20% | 2.17% | 1.94% | 1.86% | 1.82% | |
| Ile | 5.84% | 2.88% | 2.85% | 3.09% | 3.17% | 3.24% | |
| Leu | 10.85% | 7.16% | 7.65% | 8.35% | 8.60% | 8.73% | |
| Lys | 4.48% | 7.31% | 6.68% | 6.40% | 6.30% | 6.28% | |
| Met | 2.52% | 3.30% | 2.40% | 2.36% | 2.29% | 2.22% | |
| Phe | 3.86% | 1.73% | 1.69% | 1.77% | 1.77% | 1.73% | |
| Pro | 4.46% | 5.97% | 6.15% | 6.15% | 6.14% | 6.16% | |
| Ser | 6.06% | 9.52% | 9.66% | 9.05% | 8.93% | 8.97% | |
| Thr | 5.24% | 5.58% | 5.77% | 5.91% | 6.03% | 6.22% | |
| Trp | 1.40% | 0.41% | 0.40% | 0.44% | 0.46% | 0.46% | |
| Tyr | 2.87% | 1.44% | 1.35% | 1.29% | 1.25% | 1.22% | |
| Val | 6.90% | 3.85% | 4.07% | 4.42% | 4.60% | 4.77% |
