Phylum Epsilonproteobacteria
Protein Length (Details)
Average protein length
| Proteins Length | |
|---|---|
| For proteins with length <= 1000 | 302 |
| For all proteins | 313 |
Proteins longer than 1000
| Length Range | Proteins Count |
|---|---|
| 1001 - 2000 | 139 |
| 2001 - 5000 | 10 |
| 5001 - 10000 | 0 |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
| Superkingdom | Phylum | Organism | Proteins |
|---|---|---|---|
| Bacteria | Epsilonproteobacteria | NC_000915.1 | 1566 |
| Bacteria | Epsilonproteobacteria | NC_000921.1 | 1488 |
| Bacteria | Epsilonproteobacteria | NC_002163.1 | 1622 |
| Bacteria | Epsilonproteobacteria | NC_003912.7 | 1836 |
| Bacteria | Epsilonproteobacteria | NC_004917.1 | 1874 |
| Bacteria | Epsilonproteobacteria | NC_005090.1 | 2041 |
| Bacteria | Epsilonproteobacteria | NC_007575.1 | 2093 |
Proteins by COGs (Details) (COG ordering)
| COG Group | COG | Proteins |
|---|---|---|
| Information storage and processing (Isp) | B - Chromatin structure and dynamics | 1 |
| J - Translation | 905 | |
| K - Transcription | 352 | |
| L - Replication, recombination and repair | 562 | |
| Total | 1782 | |
| Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 138 |
| M - Cell wall/membrane biogenesis | 828 | |
| N - Cell motility | 417 | |
| O - Posttranslational modification, protein turnover, chaperones | 510 | |
| T - Signal transduction mechanisms | 544 | |
| U - Intracellular trafficking and secretion | 376 | |
| V - Defense mechanisms | 179 | |
| Z - Cytoskeleton | 1 | |
| Total | 2672 | |
| Metabolism (Me) | C - Energy production and conversion | 726 |
| E - Amino acid transport and metabolism | 856 | |
| F - Nucleotide transport and metabolism | 321 | |
| G - Carbohydrate transport and metabolism | 309 | |
| H - Coenzyme transport and metabolism | 608 | |
| I - Lipid transport and metabolism | 272 | |
| P - Inorganic ion transport and metabolism | 578 | |
| Q - Secondary metabolites biosynthesis, transport and catabolism | 114 | |
| Total | 3560 | |
| Poorly characterized (Pc) | R - General function prediction only | 1048 |
| S - Function unknown | 690 | |
| Total | 1738 | |
| Not in cogs (N.C.) | - - Not in COGs | 3086 |
| Total | 3086 |
Amino Acids in Proteins With Disordered Regions
| Phylum | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
|---|---|---|---|---|---|---|---|
| Epsilonproteobacteria | Ala | 7.02% | 5.75% | 6.20% | 6.49% | 6.67% | 6.88% |
| Arg | 3.61% | 3.92% | 3.95% | 3.93% | 3.85% | 3.74% | |
| Asn | 5.40% | 6.54% | 6.60% | 6.78% | 6.99% | 7.27% | |
| Asp | 5.02% | 5.53% | 5.51% | 5.55% | 5.57% | 5.69% | |
| Cys | 1.09% | 0.40% | 0.43% | 0.49% | 0.51% | 0.49% | |
| Gln | 3.37% | 4.60% | 4.97% | 5.29% | 5.54% | 5.85% | |
| Glu | 7.16% | 11.15% | 11.40% | 11.52% | 11.67% | 11.97% | |
| Gly | 5.96% | 5.01% | 4.73% | 4.30% | 4.17% | 4.08% | |
| His | 1.96% | 1.75% | 1.72% | 1.51% | 1.46% | 1.40% | |
| Ile | 8.03% | 4.69% | 4.82% | 5.26% | 5.41% | 5.52% | |
| Leu | 10.77% | 7.69% | 8.18% | 8.76% | 8.99% | 9.11% | |
| Lys | 8.45% | 14.00% | 13.44% | 13.25% | 13.23% | 13.22% | |
| Met | 2.38% | 3.12% | 2.20% | 2.21% | 2.18% | 2.16% | |
| Phe | 5.35% | 2.68% | 2.68% | 2.87% | 2.88% | 2.88% | |
| Pro | 3.11% | 3.51% | 3.59% | 3.54% | 3.51% | 3.51% | |
| Ser | 6.85% | 9.96% | 10.18% | 9.72% | 9.67% | 9.68% | |
| Thr | 4.40% | 4.62% | 4.91% | 5.06% | 5.19% | 5.41% | |
| Trp | 0.75% | 0.21% | 0.19% | 0.20% | 0.19% | 0.19% | |
| Tyr | 3.70% | 1.94% | 1.89% | 1.86% | 1.83% | 1.77% | |
| Val | 5.61% | 2.94% | 3.04% | 3.26% | 3.36% | 3.43% |
