Introduction
The paper Bioinformatics analysis of disordered proteins in prokaryotes (Gordana M. Pavlović-Lažetić, Nenad S. Mitić, Jovana J. Kovačević, Zoran Obradović, Saša Malkov, Miloš V. Beljanski, BMC Bioinformatics, 12:66, 2011., DOI: 10.1186/1471-2105-12-66) presents the results of an exhaustive analysis on protein disorder content in prokaryotes, performed by the Bioinformatics Research Group of the Faculty of Mathematics, University of Belgrade.
The paper references this web site in many places. Here are the main references with appropriate data and explanations on how to find the other appropriate data at this site.
Navigation
The most of the data is presented by domains. The most higher domains are superkingdoms. Each of the superkingdoms contains many phyla, and each of the phyla contains many organisms.
The navigation through the domains is possible in two ways. The first one is to use the drop-down lists at the right side of the pages, in section "Select a Domain". Depending on the currently selected domain, it is possible to select specific superkingdom, phylum and/or organism.
Another way to navigate through the domains is to use link in the tables presented in the page (for example, the links in the table "Proteins by Phyla") and the breadcrumbs at the top of the page. The table links are used to go down the domain hierarchy, and the breadcrumbs are used to go up the hierarchy.
References
- L1 - Basic numerical characteristics of the dataset
- L2 - Number of proteins by length
- L3 - Number of disordered regions
- L4 - Number of disordered regions by COGs of proteins
- L5 - Number of disordered regions per 100 AA by protein length by COGs of proteins
- L6 - Amino acid contents of disordered regions
- L7 - Proteins with disordered regions
- L8 - Distribution of Amino-acids in superkingdoms and phylums
- L9 - Ordering of COGs of proteins
- L10 - Genomic and ecological characteristics
- L11 - Cross correlations of ecological characteristics