Phylum Alphaproteobacteria
Protein Length (Details)
Average protein length
| Proteins Length | |
|---|---|
| For proteins with length <= 1000 | 297 |
| For all proteins | 313 |
Proteins longer than 1000
| Length Range | Proteins Count |
|---|---|
| 1001 - 2000 | 1019 |
| 2001 - 5000 | 75 |
| 5001 - 10000 | 4 |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
Proteins by COGs (Details) (COG ordering)
| COG Group | COG | Proteins |
|---|---|---|
| Information storage and processing (Isp) | B - Chromatin structure and dynamics | 28 |
| J - Translation | 4484 | |
| K - Transcription | 4013 | |
| L - Replication, recombination and repair | 3566 | |
| Total | 11862 | |
| Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 614 |
| M - Cell wall/membrane biogenesis | 3789 | |
| N - Cell motility | 915 | |
| O - Posttranslational modification, protein turnover, chaperones | 2982 | |
| T - Signal transduction mechanisms | 3100 | |
| U - Intracellular trafficking and secretion | 1616 | |
| V - Defense mechanisms | 806 | |
| W - Extracellular structures | 13 | |
| Z - Cytoskeleton | 1 | |
| Total | 12919 | |
| Metabolism (Me) | C - Energy production and conversion | 4201 |
| E - Amino acid transport and metabolism | 5874 | |
| F - Nucleotide transport and metabolism | 1610 | |
| G - Carbohydrate transport and metabolism | 3222 | |
| H - Coenzyme transport and metabolism | 2969 | |
| I - Lipid transport and metabolism | 2844 | |
| P - Inorganic ion transport and metabolism | 3135 | |
| Q - Secondary metabolites biosynthesis, transport and catabolism | 1648 | |
| Total | 23530 | |
| Poorly characterized (Pc) | R - General function prediction only | 7195 |
| S - Function unknown | 5373 | |
| Total | 12568 | |
| Not in cogs (N.C.) | - - Not in COGs | 17619 |
| Total | 17619 |
Amino Acids in Proteins With Disordered Regions
| Phylum | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
|---|---|---|---|---|---|---|---|
| Alphaproteobacteria | Ala | 11.17% | 11.11% | 12.01% | 12.82% | 13.29% | 13.77% |
| Arg | 6.44% | 8.02% | 8.45% | 8.70% | 8.70% | 8.61% | |
| Asn | 3.32% | 3.47% | 3.25% | 3.12% | 3.11% | 3.15% | |
| Asp | 5.59% | 6.40% | 6.28% | 6.19% | 6.22% | 6.29% | |
| Cys | 0.96% | 0.42% | 0.46% | 0.53% | 0.55% | 0.55% | |
| Gln | 3.20% | 4.13% | 4.31% | 4.46% | 4.60% | 4.80% | |
| Glu | 5.70% | 8.37% | 8.20% | 8.05% | 8.07% | 8.14% | |
| Gly | 8.03% | 8.00% | 7.83% | 7.58% | 7.57% | 7.64% | |
| His | 2.06% | 1.91% | 1.88% | 1.73% | 1.66% | 1.64% | |
| Ile | 6.03% | 3.02% | 3.01% | 3.18% | 3.24% | 3.27% | |
| Leu | 9.97% | 6.52% | 6.86% | 7.30% | 7.43% | 7.44% | |
| Lys | 4.39% | 6.70% | 6.20% | 5.92% | 5.83% | 5.78% | |
| Met | 2.47% | 3.16% | 2.43% | 2.36% | 2.24% | 2.13% | |
| Phe | 3.89% | 1.82% | 1.81% | 1.90% | 1.90% | 1.89% | |
| Pro | 4.82% | 6.92% | 7.18% | 7.27% | 7.34% | 7.45% | |
| Ser | 5.89% | 8.95% | 9.01% | 8.60% | 8.54% | 8.60% | |
| Thr | 5.26% | 5.54% | 5.62% | 5.69% | 5.77% | 5.90% | |
| Trp | 1.21% | 0.39% | 0.38% | 0.41% | 0.42% | 0.42% | |
| Tyr | 2.48% | 1.15% | 1.07% | 1.04% | 1.02% | 1.01% | |
| Val | 7.13% | 4.03% | 4.23% | 4.54% | 4.69% | 4.81% |
