Phylum Actinobacteria
Protein Length (Details)
Average protein length
Proteins Length | |
---|---|
For proteins with length <= 1000 | 309 |
For all proteins | 329 |
Proteins longer than 1000
Length Range | Proteins Count |
---|---|
1001 - 2000 | 947 |
2001 - 5000 | 112 |
5001 - 10000 | 12 |
Proteins longer than 10000
Protein ID | Protein Lenght | Organism | AA Sequence |
---|---|---|---|
54027007 | 14474 | NC_006361.1 | Download |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
Superkingdom | Phylum | Organism | Proteins |
---|---|---|---|
Bacteria | Actinobacteria | NC_000962.2 | 3989 |
Bacteria | Actinobacteria | NC_002677.1 | 1599 |
Bacteria | Actinobacteria | NC_002755.2 | 4123 |
Bacteria | Actinobacteria | NC_002935.2 | 2272 |
Bacteria | Actinobacteria | NC_002944.2 | 4350 |
Bacteria | Actinobacteria | NC_002945.3 | 3920 |
Bacteria | Actinobacteria | NC_003155.4 | 7577 |
Bacteria | Actinobacteria | NC_003450.3 | 2993 |
Bacteria | Actinobacteria | NC_003888.3 | 7767 |
Bacteria | Actinobacteria | NC_004307.2 | 1727 |
Bacteria | Actinobacteria | NC_004369.1 | 2938 |
Bacteria | Actinobacteria | NC_004551.1 | 783 |
Bacteria | Actinobacteria | NC_004572.3 | 808 |
Bacteria | Actinobacteria | NC_006085.1 | 2297 |
Bacteria | Actinobacteria | NC_006087.1 | 2030 |
Bacteria | Actinobacteria | NC_006361.1 | 5683 |
Bacteria | Actinobacteria | NC_006958.1 | 3057 |
Bacteria | Actinobacteria | NC_007164.1 | 2103 |
Bacteria | Actinobacteria | NC_007333.1 | 3109 |
Proteins by COGs (Details) (COG ordering)
COG Group | COG | Proteins |
---|---|---|
Information storage and processing (Isp) | A - RNA processing and modification | 19 |
B - Chromatin structure and dynamics | 6 | |
J - Translation | 2848 | |
K - Transcription | 4500 | |
L - Replication, recombination and repair | 2740 | |
Total | 9696 | |
Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 464 |
M - Cell wall/membrane biogenesis | 2165 | |
N - Cell motility | 248 | |
O - Posttranslational modification, protein turnover, chaperones | 1612 | |
T - Signal transduction mechanisms | 2237 | |
U - Intracellular trafficking and secretion | 468 | |
V - Defense mechanisms | 812 | |
Z - Cytoskeleton | 7 | |
Total | 7857 | |
Metabolism (Me) | C - Energy production and conversion | 3014 |
E - Amino acid transport and metabolism | 3956 | |
F - Nucleotide transport and metabolism | 1360 | |
G - Carbohydrate transport and metabolism | 3386 | |
H - Coenzyme transport and metabolism | 2503 | |
I - Lipid transport and metabolism | 2775 | |
P - Inorganic ion transport and metabolism | 2395 | |
Q - Secondary metabolites biosynthesis, transport and catabolism | 2158 | |
Total | 19858 | |
Poorly characterized (Pc) | R - General function prediction only | 6170 |
S - Function unknown | 3489 | |
Total | 9659 | |
Not in cogs (N.C.) | - - Not in COGs | 18808 |
Total | 18808 |
Amino Acids in Proteins With Disordered Regions
Phylum | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
---|---|---|---|---|---|---|---|
Actinobacteria | Ala | 12.61% | 12.54% | 13.28% | 13.92% | 14.29% | 14.62% |
Arg | 7.33% | 9.12% | 9.45% | 9.59% | 9.58% | 9.44% | |
Asn | 2.38% | 2.45% | 2.30% | 2.25% | 2.26% | 2.33% | |
Asp | 5.97% | 6.74% | 6.53% | 6.36% | 6.33% | 6.30% | |
Cys | 0.82% | 0.44% | 0.47% | 0.53% | 0.55% | 0.56% | |
Gln | 3.03% | 3.60% | 3.64% | 3.65% | 3.69% | 3.75% | |
Glu | 5.53% | 7.59% | 7.30% | 7.04% | 6.94% | 6.84% | |
Gly | 9.00% | 9.93% | 10.03% | 10.19% | 10.49% | 11.02% | |
His | 2.26% | 2.16% | 2.13% | 1.99% | 1.93% | 1.91% | |
Ile | 4.27% | 1.98% | 1.94% | 2.00% | 2.00% | 1.98% | |
Leu | 9.88% | 6.41% | 6.64% | 6.93% | 6.99% | 6.93% | |
Lys | 2.53% | 3.54% | 3.20% | 3.00% | 2.91% | 2.87% | |
Met | 1.99% | 2.35% | 1.84% | 1.72% | 1.60% | 1.50% | |
Phe | 3.02% | 1.40% | 1.40% | 1.44% | 1.45% | 1.45% | |
Pro | 5.70% | 8.55% | 8.83% | 8.97% | 9.07% | 9.20% | |
Ser | 5.55% | 8.13% | 7.98% | 7.56% | 7.45% | 7.40% | |
Thr | 6.08% | 6.56% | 6.63% | 6.64% | 6.64% | 6.71% | |
Trp | 1.46% | 0.55% | 0.56% | 0.60% | 0.62% | 0.63% | |
Tyr | 2.15% | 1.08% | 1.04% | 1.02% | 1.02% | 1.01% | |
Val | 8.43% | 4.86% | 5.03% | 5.26% | 5.33% | 5.35% |