Phylum Planctomycetes
Protein Length (Details)
Average protein length
| Proteins Length | |
|---|---|
| For proteins with length <= 1000 | 275 |
| For all proteins | 314 |
Proteins longer than 1000
| Length Range | Proteins Count |
|---|---|
| 1001 - 2000 | 210 |
| 2001 - 5000 | 17 |
| 5001 - 10000 | 6 |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
| Superkingdom | Phylum | Organism | Proteins |
|---|---|---|---|
| Bacteria | Planctomycetes | NC_005027.1 | 7322 |
Proteins by COGs (Details) (COG ordering)
| COG Group | COG | Proteins |
|---|---|---|
| Information storage and processing (Isp) | A - RNA processing and modification | 1 |
| B - Chromatin structure and dynamics | 1 | |
| J - Translation | 151 | |
| K - Transcription | 260 | |
| L - Replication, recombination and repair | 245 | |
| Total | 584 | |
| Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 23 |
| M - Cell wall/membrane biogenesis | 204 | |
| N - Cell motility | 82 | |
| O - Posttranslational modification, protein turnover, chaperones | 142 | |
| T - Signal transduction mechanisms | 229 | |
| U - Intracellular trafficking and secretion | 130 | |
| V - Defense mechanisms | 84 | |
| Z - Cytoskeleton | 1 | |
| Total | 814 | |
| Metabolism (Me) | C - Energy production and conversion | 185 |
| E - Amino acid transport and metabolism | 218 | |
| F - Nucleotide transport and metabolism | 73 | |
| G - Carbohydrate transport and metabolism | 234 | |
| H - Coenzyme transport and metabolism | 135 | |
| I - Lipid transport and metabolism | 106 | |
| P - Inorganic ion transport and metabolism | 254 | |
| Q - Secondary metabolites biosynthesis, transport and catabolism | 86 | |
| Total | 1211 | |
| Poorly characterized (Pc) | R - General function prediction only | 542 |
| S - Function unknown | 318 | |
| Total | 860 | |
| Not in cogs (N.C.) | - - Not in COGs | 4118 |
| Total | 4118 |
Amino Acids in Proteins With Disordered Regions
| Phylum | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
|---|---|---|---|---|---|---|---|
| Planctomycetes | Ala | 9.26% | 8.63% | 8.92% | 9.20% | 9.39% | 9.64% |
| Arg | 6.95% | 8.08% | 8.32% | 8.52% | 8.54% | 8.52% | |
| Asn | 3.37% | 3.79% | 3.68% | 3.60% | 3.59% | 3.61% | |
| Asp | 6.23% | 6.93% | 6.75% | 6.60% | 6.59% | 6.59% | |
| Cys | 1.27% | 0.77% | 0.82% | 0.91% | 0.96% | 0.98% | |
| Gln | 4.03% | 4.81% | 4.91% | 5.00% | 5.07% | 5.18% | |
| Glu | 6.02% | 8.15% | 7.96% | 7.80% | 7.80% | 7.80% | |
| Gly | 7.48% | 7.19% | 6.96% | 6.73% | 6.70% | 6.80% | |
| His | 2.31% | 2.12% | 2.10% | 1.94% | 1.88% | 1.84% | |
| Ile | 4.95% | 2.75% | 2.79% | 2.94% | 3.00% | 3.01% | |
| Leu | 9.33% | 6.40% | 6.63% | 6.94% | 7.01% | 7.01% | |
| Lys | 3.42% | 4.75% | 4.53% | 4.42% | 4.33% | 4.30% | |
| Met | 2.43% | 2.82% | 2.44% | 2.43% | 2.36% | 2.31% | |
| Phe | 3.70% | 2.06% | 2.09% | 2.18% | 2.20% | 2.20% | |
| Pro | 5.33% | 7.37% | 7.51% | 7.55% | 7.61% | 7.70% | |
| Ser | 7.38% | 11.23% | 11.39% | 11.14% | 11.11% | 11.09% | |
| Thr | 5.85% | 6.29% | 6.38% | 6.40% | 6.41% | 6.42% | |
| Trp | 1.54% | 0.59% | 0.60% | 0.64% | 0.65% | 0.66% | |
| Tyr | 2.10% | 1.04% | 1.03% | 1.01% | 1.01% | 1.01% | |
| Val | 7.05% | 4.23% | 4.36% | 4.56% | 4.66% | 4.73% |
