Phylum Deltaproteobacteria
Protein Length (Details)
Average protein length
| Proteins Length | |
|---|---|
| For proteins with length <= 1000 | 302 |
| For all proteins | 319 |
Proteins longer than 1000
| Length Range | Proteins Count |
|---|---|
| 1001 - 2000 | 375 |
| 2001 - 5000 | 28 |
| 5001 - 10000 | 1 |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
| Superkingdom | Phylum | Organism | Proteins |
|---|---|---|---|
| Bacteria | Deltaproteobacteria | NC_002937.3 | 3368 |
| Bacteria | Deltaproteobacteria | NC_002939.4 | 3435 |
| Bacteria | Deltaproteobacteria | NC_005363.1 | 3587 |
| Bacteria | Deltaproteobacteria | NC_006138.1 | 3105 |
| Bacteria | Deltaproteobacteria | NC_007498.2 | 3350 |
| Bacteria | Deltaproteobacteria | NC_007517.1 | 3511 |
| Bacteria | Deltaproteobacteria | NC_007519.1 | 3772 |
Proteins by COGs (Details) (COG ordering)
| COG Group | COG | Proteins |
|---|---|---|
| Information storage and processing (Isp) | A - RNA processing and modification | 4 |
| B - Chromatin structure and dynamics | 15 | |
| J - Translation | 1161 | |
| K - Transcription | 921 | |
| L - Replication, recombination and repair | 956 | |
| Total | 2959 | |
| Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 211 |
| M - Cell wall/membrane biogenesis | 1339 | |
| N - Cell motility | 792 | |
| O - Posttranslational modification, protein turnover, chaperones | 832 | |
| T - Signal transduction mechanisms | 1764 | |
| U - Intracellular trafficking and secretion | 632 | |
| V - Defense mechanisms | 276 | |
| Z - Cytoskeleton | 10 | |
| Total | 5135 | |
| Metabolism (Me) | C - Energy production and conversion | 1567 |
| E - Amino acid transport and metabolism | 1431 | |
| F - Nucleotide transport and metabolism | 433 | |
| G - Carbohydrate transport and metabolism | 711 | |
| H - Coenzyme transport and metabolism | 942 | |
| I - Lipid transport and metabolism | 514 | |
| P - Inorganic ion transport and metabolism | 854 | |
| Q - Secondary metabolites biosynthesis, transport and catabolism | 313 | |
| Total | 6344 | |
| Poorly characterized (Pc) | R - General function prediction only | 2062 |
| S - Function unknown | 1447 | |
| Total | 3509 | |
| Not in cogs (N.C.) | - - Not in COGs | 6921 |
| Total | 6921 |
Amino Acids in Proteins With Disordered Regions
| Phylum | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
|---|---|---|---|---|---|---|---|
| Deltaproteobacteria | Ala | 9.83% | 9.47% | 10.49% | 11.42% | 11.97% | 12.56% |
| Arg | 6.41% | 7.61% | 7.98% | 8.15% | 8.16% | 8.05% | |
| Asn | 3.18% | 3.34% | 3.10% | 2.98% | 2.95% | 2.98% | |
| Asp | 5.33% | 5.89% | 5.71% | 5.58% | 5.57% | 5.64% | |
| Cys | 1.32% | 0.69% | 0.78% | 0.91% | 0.93% | 0.92% | |
| Gln | 3.40% | 4.46% | 4.69% | 4.88% | 5.03% | 5.28% | |
| Glu | 6.30% | 9.64% | 9.54% | 9.44% | 9.56% | 9.69% | |
| Gly | 8.01% | 8.06% | 7.92% | 7.69% | 7.66% | 7.81% | |
| His | 2.15% | 2.05% | 2.04% | 1.86% | 1.78% | 1.76% | |
| Ile | 5.54% | 2.79% | 2.78% | 3.01% | 3.07% | 3.15% | |
| Leu | 10.28% | 6.59% | 6.94% | 7.36% | 7.49% | 7.47% | |
| Lys | 4.62% | 7.51% | 6.92% | 6.64% | 6.57% | 6.53% | |
| Met | 2.62% | 3.41% | 2.58% | 2.58% | 2.54% | 2.49% | |
| Phe | 4.02% | 1.88% | 1.86% | 1.93% | 1.91% | 1.87% | |
| Pro | 4.61% | 6.27% | 6.48% | 6.53% | 6.56% | 6.58% | |
| Ser | 5.81% | 8.84% | 8.90% | 8.41% | 8.29% | 8.30% | |
| Thr | 5.39% | 5.71% | 5.88% | 5.98% | 6.06% | 6.20% | |
| Trp | 1.11% | 0.35% | 0.33% | 0.36% | 0.36% | 0.36% | |
| Tyr | 2.71% | 1.31% | 1.24% | 1.22% | 1.18% | 1.16% | |
| Val | 7.38% | 4.14% | 4.39% | 4.74% | 4.91% | 5.07% |
