Superkingdom Archaea
Protein Length (Details)
Average protein length
| Proteins Length | |
|---|---|
| For proteins with length <= 1000 | 279 |
| For all proteins | 290 |
Proteins longer than 1000
| Length Range | Proteins Count |
|---|---|
| 1001 - 2000 | 552 |
| 2001 - 5000 | 38 |
| 5001 - 10000 | 0 |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
| Superkingdom | Phylum | Organisms | Proteins |
|---|---|---|---|
| Archaea | Crenarchaeota | 5 | 12320 |
| Archaea | Euryarchaeota | 19 | 42960 |
| Archaea | Nanoarchaeota | 1 | 535 |
Proteins by COGs (Details) (COG ordering)
| COG Group | COG | Proteins |
|---|---|---|
| Information storage and processing (Isp) | A - RNA processing and modification | 37 |
| B - Chromatin structure and dynamics | 90 | |
| J - Translation | 3960 | |
| K - Transcription | 2326 | |
| L - Replication, recombination and repair | 2784 | |
| Total | 9010 | |
| Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 397 |
| M - Cell wall/membrane biogenesis | 1453 | |
| N - Cell motility | 516 | |
| O - Posttranslational modification, protein turnover, chaperones | 1714 | |
| T - Signal transduction mechanisms | 1100 | |
| U - Intracellular trafficking and secretion | 607 | |
| V - Defense mechanisms | 563 | |
| W - Extracellular structures | 1 | |
| Total | 5871 | |
| Metabolism (Me) | C - Energy production and conversion | 3544 |
| E - Amino acid transport and metabolism | 3701 | |
| F - Nucleotide transport and metabolism | 1339 | |
| G - Carbohydrate transport and metabolism | 1814 | |
| H - Coenzyme transport and metabolism | 2704 | |
| I - Lipid transport and metabolism | 1084 | |
| P - Inorganic ion transport and metabolism | 2181 | |
| Q - Secondary metabolites biosynthesis, transport and catabolism | 544 | |
| Total | 15718 | |
| Poorly characterized (Pc) | R - General function prediction only | 6819 |
| S - Function unknown | 4888 | |
| Total | 11707 | |
| Not in cogs (N.C.) | - - Not in COGs | 14718 |
| Total | 14718 |
Amino Acids in Proteins With Disordered Regions
| Superkingdom | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
|---|---|---|---|---|---|---|---|
| Archaea | Ala | 7.48% | 6.54% | 7.19% | 7.74% | 8.09% | 8.50% |
| Arg | 5.25% | 6.56% | 6.92% | 7.22% | 7.27% | 7.30% | |
| Asn | 3.99% | 3.92% | 3.68% | 3.56% | 3.59% | 3.67% | |
| Asp | 5.61% | 6.65% | 6.86% | 7.10% | 7.34% | 7.62% | |
| Cys | 0.90% | 0.47% | 0.54% | 0.63% | 0.66% | 0.70% | |
| Gln | 2.16% | 2.75% | 2.90% | 3.04% | 3.17% | 3.33% | |
| Glu | 7.82% | 12.89% | 13.21% | 13.31% | 13.46% | 13.68% | |
| Gly | 7.29% | 6.92% | 6.75% | 6.62% | 6.65% | 6.72% | |
| His | 1.62% | 1.49% | 1.51% | 1.39% | 1.34% | 1.34% | |
| Ile | 7.67% | 4.24% | 4.24% | 4.46% | 4.51% | 4.53% | |
| Leu | 9.57% | 6.49% | 6.82% | 7.26% | 7.41% | 7.51% | |
| Lys | 6.29% | 9.57% | 8.88% | 8.35% | 8.08% | 7.92% | |
| Met | 2.32% | 3.23% | 2.24% | 2.16% | 2.06% | 1.98% | |
| Phe | 4.08% | 1.93% | 1.94% | 2.07% | 2.08% | 2.07% | |
| Pro | 4.15% | 5.26% | 5.39% | 5.31% | 5.32% | 5.28% | |
| Ser | 6.08% | 8.71% | 8.81% | 8.31% | 8.26% | 8.34% | |
| Thr | 5.09% | 5.32% | 5.67% | 5.92% | 6.14% | 6.45% | |
| Trp | 1.03% | 0.38% | 0.36% | 0.40% | 0.41% | 0.42% | |
| Tyr | 3.86% | 1.83% | 1.73% | 1.70% | 1.67% | 1.65% | |
| Val | 7.76% | 4.83% | 5.06% | 5.46% | 5.63% | 5.79% |
