Phylum Betaproteobacteria
Protein Length (Details)
Average protein length
Proteins Length | |
---|---|
For proteins with length <= 1000 | 307 |
For all proteins | 324 |
Proteins longer than 1000
Length Range | Proteins Count |
---|---|
1001 - 2000 | 845 |
2001 - 5000 | 80 |
5001 - 10000 | 3 |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
Superkingdom | Phylum | Organism | Proteins |
---|---|---|---|
Bacteria | Betaproteobacteria | NC_002927.3 | 4993 |
Bacteria | Betaproteobacteria | NC_002928.3 | 4184 |
Bacteria | Betaproteobacteria | NC_002929.2 | 3436 |
Bacteria | Betaproteobacteria | NC_002946.2 | 2002 |
Bacteria | Betaproteobacteria | NC_003112.2 | 2063 |
Bacteria | Betaproteobacteria | NC_003116.1 | 1909 |
Bacteria | Betaproteobacteria | NC_003295.1 | 3437 |
Bacteria | Betaproteobacteria | NC_004757.1 | 2458 |
Bacteria | Betaproteobacteria | NC_005085.1 | 4406 |
Bacteria | Betaproteobacteria | NC_006349.2 | 2029 |
Bacteria | Betaproteobacteria | NC_006350.1 | 3397 |
Bacteria | Betaproteobacteria | NC_006513.1 | 4119 |
Bacteria | Betaproteobacteria | NC_007298.1 | 4165 |
Bacteria | Betaproteobacteria | NC_007347.1 | 3439 |
Bacteria | Betaproteobacteria | NC_007404.1 | 2825 |
Bacteria | Betaproteobacteria | NC_007434.1 | 3733 |
Bacteria | Betaproteobacteria | NC_007509.1 | 1209 |
Bacteria | Betaproteobacteria | NC_007614.1 | 2756 |
Bacteria | Betaproteobacteria | NC_007651.1 | 3274 |
Proteins by COGs (Details) (COG ordering)
COG Group | COG | Proteins |
---|---|---|
Information storage and processing (Isp) | A - RNA processing and modification | 24 |
B - Chromatin structure and dynamics | 39 | |
J - Translation | 2844 | |
K - Transcription | 3836 | |
L - Replication, recombination and repair | 2856 | |
Total | 9371 | |
Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 516 |
M - Cell wall/membrane biogenesis | 3348 | |
N - Cell motility | 1243 | |
O - Posttranslational modification, protein turnover, chaperones | 2050 | |
T - Signal transduction mechanisms | 2566 | |
U - Intracellular trafficking and secretion | 1690 | |
V - Defense mechanisms | 615 | |
W - Extracellular structures | 8 | |
Z - Cytoskeleton | 2 | |
Total | 10707 | |
Metabolism (Me) | C - Energy production and conversion | 3635 |
E - Amino acid transport and metabolism | 4725 | |
F - Nucleotide transport and metabolism | 1072 | |
G - Carbohydrate transport and metabolism | 2297 | |
H - Coenzyme transport and metabolism | 2300 | |
I - Lipid transport and metabolism | 2389 | |
P - Inorganic ion transport and metabolism | 2718 | |
Q - Secondary metabolites biosynthesis, transport and catabolism | 1457 | |
Total | 19105 | |
Poorly characterized (Pc) | R - General function prediction only | 5430 |
S - Function unknown | 4801 | |
Total | 10231 | |
Not in cogs (N.C.) | - - Not in COGs | 12645 |
Total | 12645 |
Amino Acids in Proteins With Disordered Regions
Phylum | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
---|---|---|---|---|---|---|---|
Betaproteobacteria | Ala | 12.75% | 13.57% | 14.85% | 15.87% | 16.42% | 16.97% |
Arg | 7.41% | 9.79% | 10.56% | 11.18% | 11.57% | 11.97% | |
Asn | 2.79% | 2.87% | 2.59% | 2.43% | 2.37% | 2.36% | |
Asp | 5.43% | 6.06% | 5.88% | 5.78% | 5.76% | 5.76% | |
Cys | 0.99% | 0.52% | 0.60% | 0.69% | 0.74% | 0.77% | |
Gln | 3.75% | 4.77% | 4.88% | 4.98% | 5.06% | 5.14% | |
Glu | 5.39% | 7.47% | 7.17% | 6.89% | 6.79% | 6.71% | |
Gly | 8.22% | 8.24% | 8.10% | 7.90% | 7.92% | 8.03% | |
His | 2.33% | 2.35% | 2.34% | 2.26% | 2.26% | 2.31% | |
Ile | 4.72% | 2.29% | 2.24% | 2.34% | 2.38% | 2.38% | |
Leu | 10.43% | 6.72% | 7.04% | 7.42% | 7.50% | 7.43% | |
Lys | 3.35% | 4.88% | 4.29% | 3.94% | 3.79% | 3.69% | |
Met | 2.37% | 2.93% | 2.18% | 2.06% | 1.96% | 1.85% | |
Phe | 3.56% | 1.62% | 1.60% | 1.66% | 1.65% | 1.62% | |
Pro | 5.13% | 7.37% | 7.59% | 7.59% | 7.57% | 7.56% | |
Ser | 5.28% | 7.93% | 7.79% | 7.28% | 7.12% | 7.07% | |
Thr | 4.96% | 5.04% | 4.96% | 4.88% | 4.85% | 4.82% | |
Trp | 1.34% | 0.40% | 0.40% | 0.44% | 0.44% | 0.44% | |
Tyr | 2.46% | 1.10% | 1.01% | 0.97% | 0.93% | 0.90% | |
Val | 7.35% | 4.09% | 4.33% | 4.64% | 4.80% | 4.95% |