Phylum Spirochaetes
Protein Length (Details)
Average protein length
| Proteins Length | |
|---|---|
| For proteins with length <= 1000 | 284 |
| For all proteins | 299 |
Proteins longer than 1000
| Length Range | Proteins Count |
|---|---|
| 1001 - 2000 | 171 |
| 2001 - 5000 | 16 |
| 5001 - 10000 | 0 |
Disordered Regions (Details)
Number of Disordered Regions by COGs of Proteins (Details)
NOTE: Mean and standard deviation on this chart
are computed only for COGs with positive values.
Proteins by Phyla
| Superkingdom | Phylum | Organism | Proteins |
|---|---|---|---|
| Bacteria | Spirochaetes | NC_000919.1 | 1009 |
| Bacteria | Spirochaetes | NC_001318.1 | 825 |
| Bacteria | Spirochaetes | NC_002967.9 | 2759 |
| Bacteria | Spirochaetes | NC_004342.1 | 4351 |
| Bacteria | Spirochaetes | NC_005823.1 | 3390 |
| Bacteria | Spirochaetes | NC_006156.1 | 832 |
Proteins by COGs (Details) (COG ordering)
| COG Group | COG | Proteins |
|---|---|---|
| Information storage and processing (Isp) | B - Chromatin structure and dynamics | 4 |
| J - Translation | 788 | |
| K - Transcription | 376 | |
| L - Replication, recombination and repair | 548 | |
| Total | 1682 | |
| Cellular processes (Cp) | D - Cell cycle control, mitosis and meiosis | 109 |
| M - Cell wall/membrane biogenesis | 710 | |
| N - Cell motility | 408 | |
| O - Posttranslational modification, protein turnover, chaperones | 375 | |
| T - Signal transduction mechanisms | 587 | |
| U - Intracellular trafficking and secretion | 272 | |
| V - Defense mechanisms | 198 | |
| Z - Cytoskeleton | 2 | |
| Total | 2366 | |
| Metabolism (Me) | C - Energy production and conversion | 377 |
| E - Amino acid transport and metabolism | 484 | |
| F - Nucleotide transport and metabolism | 211 | |
| G - Carbohydrate transport and metabolism | 397 | |
| H - Coenzyme transport and metabolism | 306 | |
| I - Lipid transport and metabolism | 280 | |
| P - Inorganic ion transport and metabolism | 342 | |
| Q - Secondary metabolites biosynthesis, transport and catabolism | 63 | |
| Total | 2305 | |
| Poorly characterized (Pc) | R - General function prediction only | 1014 |
| S - Function unknown | 699 | |
| Total | 1713 | |
| Not in cogs (N.C.) | - - Not in COGs | 5358 |
| Total | 5358 |
Amino Acids in Proteins With Disordered Regions
| Phylum | AA | % in prots. | % in disordered regions L>=1 | % in disordered regions L>=11 | % in disordered regions L>=21 | % in disordered regions L>=31 | % in disordered regions L>=41 |
|---|---|---|---|---|---|---|---|
| Spirochaetes | Ala | 5.88% | 4.79% | 5.18% | 5.44% | 5.64% | 5.88% |
| Arg | 4.40% | 4.79% | 4.96% | 5.07% | 5.06% | 5.05% | |
| Asn | 5.20% | 6.05% | 5.84% | 5.84% | 5.93% | 6.05% | |
| Asp | 4.88% | 5.45% | 5.39% | 5.39% | 5.44% | 5.58% | |
| Cys | 1.01% | 0.43% | 0.48% | 0.54% | 0.55% | 0.53% | |
| Gln | 3.08% | 3.83% | 4.03% | 4.23% | 4.42% | 4.65% | |
| Glu | 6.96% | 11.12% | 11.31% | 11.43% | 11.67% | 12.04% | |
| Gly | 6.25% | 5.65% | 5.46% | 5.08% | 4.97% | 4.88% | |
| His | 1.67% | 1.45% | 1.42% | 1.26% | 1.20% | 1.19% | |
| Ile | 8.30% | 4.92% | 5.12% | 5.55% | 5.70% | 5.85% | |
| Leu | 10.17% | 6.99% | 7.50% | 8.17% | 8.50% | 8.69% | |
| Lys | 8.04% | 13.15% | 12.65% | 12.45% | 12.37% | 12.31% | |
| Met | 2.06% | 2.85% | 1.95% | 1.88% | 1.80% | 1.71% | |
| Phe | 5.66% | 2.86% | 2.90% | 3.09% | 3.14% | 3.11% | |
| Pro | 3.58% | 4.28% | 4.37% | 4.38% | 4.36% | 4.36% | |
| Ser | 7.45% | 10.89% | 11.31% | 10.95% | 10.88% | 11.00% | |
| Thr | 4.91% | 5.01% | 5.21% | 5.29% | 5.42% | 5.55% | |
| Trp | 0.97% | 0.33% | 0.30% | 0.33% | 0.34% | 0.34% | |
| Tyr | 3.71% | 1.94% | 1.85% | 1.81% | 1.77% | 1.78% | |
| Val | 5.83% | 3.23% | 3.41% | 3.63% | 3.75% | 3.83% |
