Amino acid distances
Statistical review of amino acid distances in proteins for pre-defined groups Distance methods: Cα-Cα, Minimum without hydrogen, Maximum without hydrogen
Statistics
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Statistics for user-defined groups
Information
Method:
Cα-Cα
Minimum without hydrogen atoms
Maximum without hydrogen atoms
Threshold of distances:
All distances
Up to: 3Å
Up to: 5Å
Up to: 8Å
Pairs from:
Different secondary structures
Same secondary structure
Scop class of proteins:
All α proteins (a)
All β proteins (b)
α and β proteins (a/b) (c)
α and β proteins (a+b) (d)
Multi-domain proteins (α and β) (e)
All proteins
Secondary structure of first AA:
α-helix (H)
3-helix (G)
5-helix (I)
Isolated β-bridge (B)
Extended strand (E)
Bend (S)
hydrogen bonded turn (T)
None (-)
All
Secondary structure of second AA:
α-helix (H)
3-helix (G)
5-helix (I)
Isolated β-bridge (B)
Extended strand (E)
Bend (S)
hydrogen bonded turn (T)
None (-)
All
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Options highlighted in blue define the group for which statistics are shown
Options highlighted in green have been selected by the user