Amino acid distances
Statistical review of amino acid distances in proteins for pre-defined groups Distance methods: Cα-Cα, Minimum without hydrogen, Maximum without hydrogen
Statistics
Graphics
Histograms
Box plots
Statistics for user-defined groups
Information
Method:
Cα-Cα
Minimum without hydrogen atoms
Maximum without hydrogen atoms
Pairs from:
Different secondary structures
Same secondary structure
Scop class of proteins:
All α proteins (a)
All β proteins (b)
α and β proteins (a/b) (c)
α and β proteins (a+b) (d)
Multi-domain proteins (α and β) (e)
All proteins
Secondary structure of first AA:
α-helix (H)
3-helix (G)
5-helix (I)
Isolated β-bridge (B)
Extended strand (E)
Bend (S)
hydrogen bonded turn (T)
None (-)
All
Secondary structure of second AA:
α-helix (H)
3-helix (G)
5-helix (I)
Isolated β-bridge (B)
Extended strand (E)
Bend (S)
hydrogen bonded turn (T)
None (-)
All
Show box plots for amino acids of the selected group
Options highlighted in blue define the group for which box plots are shown
Options highlighted in green have been selected by the user for a new group